OBO Foundry dashboard analysis¶

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/tmp/ipykernel_462/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    3
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 3 7404.333333 11992.060471 372.0 481.0 590.0 10920.5 21251.0
Declaration 3 725.333333 997.121022 115.0 150.0 185.0 1030.5 1876.0
SubClassOf 3 4326.666667 7229.004450 148.0 153.0 158.0 6416.0 12674.0
DisjointClasses 3 8.333333 9.291573 2.0 3.0 4.0 11.5 19.0
EquivalentClasses 2 5.333333 4.618802 0.0 4.0 8.0 8.0 8.0
InverseObjectProperties 2 3.000000 3.000000 0.0 1.5 3.0 4.5 6.0
SubObjectPropertyOf 2 4.666667 4.163332 0.0 3.0 6.0 7.0 8.0
TransitiveObjectProperty 1 2.000000 3.464102 0.0 0.0 0.0 3.0 6.0
DifferentIndividuals 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
ClassAssertion 1 6.333333 10.969655 0.0 0.0 0.0 9.5 19.0
AnnotationPropertyRangeOf 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
SymmetricObjectProperty 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
DataPropertyRange 1 3.333333 5.773503 0.0 0.0 0.0 5.0 10.0
SubDataPropertyOf 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
FunctionalDataProperty 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
ReflexiveObjectProperty 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
ObjectPropertyRange 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
ObjectPropertyDomain 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
FunctionalObjectProperty 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
SubAnnotationPropertyOf 1 5.666667 9.814955 0.0 0.0 0.0 8.5 17.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 3 9046.000000 14906.031397 432.0 440.0 448.0 13353.0 26258.0
ObjectSomeValuesFrom 2 3042.666667 5211.274444 0.0 34.0 68.0 4564.0 9060.0
DataSomeValuesFrom 1 3.666667 6.350853 0.0 0.0 0.0 5.5 11.0
ObjectIntersectionOf 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
ObjectUnionOf 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
DataHasValue 1 309.333333 535.781050 0.0 0.0 0.0 464.0 928.0
ObjectOneOf 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
1 gndo 0.400 0.800 0.0
2 occo 0.374 0.749 0.0
0 carolio 0.352 0.704 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 3.0 0.375333 0.024028 0.352 0.3630 0.374 0.3870 0.4
score_dash 3.0 0.751000 0.048031 0.704 0.7265 0.749 0.7745 0.8
score_impact 3.0 0.000000 0.000000 0.000 0.0000 0.000 0.0000 0.0

OBO dependency graph